IBS starts in your microbiome-Not in your head.
Do any of these sound familiar?
Typical IBS symptoms include:
You’ve seen doctors 🥼psychologists 🧠
naturopaths 🌿 and spent thousands of dollars 💰
— but nothing has worked.
Our programs are built on decades of gastroenterology expertise and the latest microbiome research.
Why Patients Are Choosing
to Treat the Microbiome
More and more people with IBS are exploring microbiome-focused care.
📋 How It Works
It’s just like seeing your GP — Just more comprehensive, and more personalised.
We are Different to Other Practitioners.
It's like seeing your GP, but walking out with confidence.
It's like seeing your GP, but walking out with confidence.
What the Program Involves
At The Microbiome Clinic, our doctors go beyond creams and prescriptions by treating the gut–skin connection. Using advanced microbiome testing and personalised programs, we give you the missing piece your skin routine has been waiting for.
Doctor Consults
Online or In-Person Consults
Medical doctors with prescribing capacity, trained in microbiome science, oversee your care every step of the way.
Microbiome Testing
Advanced Microbiome Testing
We use advanced stool and breath microbiome testing to understand your unique microbial profile and tailor your program.
Repair-4™ Program
Personalised Repair Program
4-week doctor-supervised program combining evidence-based medications, probiotics, and supplements to restore microbial balance.
Long-Term Plan
Ongoing Maintenance Plan
After your repair phase, we provide tailored probiotic support and doctor reviews to help your vaginal microbiome stay balanced and resilient.
Grounded in Evidence, Backed by Research.
Grounded in the latest peer-reviewed microbiome science.
Gut, 2012
Jeffery, Ian B et al. (2012) An irritable bowel syndrome subtype defined by species-specific alterations in faecal microbiota. Gut
AJG, 2022
Villanueva-Millan, M. et al, (2022). Methanogens and Hydrogen Sulfide Producing Bacteria Guide Distinct Gut Microbe Profiles and Irritable Bowel Syndrome Subtypes. AJG
Gastroenterology, 2019
Pittayanon, R. et al. (2019). Gut Microbiota in Patients With Irritable Bowel Syndrome—A Systematic Review. Gastroenterology
NEJM, 2011
Pimentel, et al. (2011). Rifaximin Therapy for Patients with Irritable Bowel Syndrome without Constipation. New England Journal of Medicine
Microbiome, 2023
Mayer, E. A. et al, (2023). Multi-omics profiles of the intestinal microbiome in irritable bowel syndrome and its bowel habit subtypes. Microbiome
Gastroenterology, 2016
Lembo, A. et al, (2016). Repeat Treatment With Rifaximin Is Safe and Effective in Patients With Diarrhea-Predominant Irritable Bowel Syndrome. Gastroenterology
Developed by a Leading
Australian Gastroenterologist
Dr. Paul Froomes — Gastroenterologist and Microbiome Expert.
Dr. Paul Froomes
BMedSci, MBBS, FRACP, MD
Dr. Froomes is a gastroenterologist with over 30 years of experience helping patients with complex gastrointestinal disorders. Trained at Monash University and the RACP, he has gone on to complete advanced training in endoscopy and oesophageal physiology, as well as a master’s degree in liver disease at the University of Melbourne.
Beyond his hospital work, Dr Froomes has dedicated his career to finding the root-causes of gut issues like IBS, reflux, and inflammatory bowel disease.
He co-founded The Microbiome Clinic™, a new age medical practice built to make his decades of learnings about the microbiome accessible to more patients and practitioners.
After seeing countless people struggle with conditions that didn’t improve under standard care, he recognised the need for a model that treats the root cause—imbalances in the microbiome—rather than just the symptoms.
As seen on...
The Vain-ish Podcast with Bed Judd & Jess Roberts
30+ Years of Practice
Specialist-trained Doctor —Gastroenterologist & Hepatologist
Board certified in colonoscopy, gastroscopy, general gastroenterology and hepatology.
TGA Accredited FMT Provider
One of only few accredited Faecal Microbial Transplant providers in Australia
Manufacturer & Provider of Faecal Microbial Transplants (FMTs) — A groundbreaking treatment therapy.
The Microbiome Clinic™
Founder of Australia's First Medical Practice dedicated to the Microbiome
Formalised his 30+ years of clinical experience treating the microbiome to redefine mainstream healthcare.
Author & Enthusiast
Gut Reloaded: A Doctor's Guide to Transform Your Gut Microbiome, Health and Life
A book about Dr. Froomes' learnings about the gut microbiome with anecdotes, case studies and microbiome recipes.
FAQs
Get answers to your questions and learn about our platform.
What makes your approach to IBS different from other doctors, specialists or naturopaths?
Our doctors are trained to treat the microbiome, combining medical expertise, prescribing rights, and access to advanced testing to uncover the root causes of your IBS.
Can IBS really be linked to the gut microbiome?
Yes, research shows IBS is often associated with gut dysbiosis — an imbalance between beneficial and harmful microbes — which can disrupt digestion, gas production, and bowel regularity.
How do you test for microbiome imbalances?
We use advanced DNA and breath testing to assess your gut microbiome composition and function. This gives us a detailed view of what’s driving your symptoms.